Heat oven to 420ºF. Arrange the squash in a single layer on a baking sheet and drizzle with 1 tablespoon olive oil. Bake 20 minutes, or until tender and slightly browned. Reduce the oven temperature to 350F.
While the squash roasts, prepare the sauce: In a medium saucepan, combine the enchilada sauce, raisins, cinnamon, chocolate, nut butter, and sesame seeds. Bring to a simmer; cook 10 minutes, or until raisins are plump. Transfer to a blender and blend until smooth.
Heat the remaining oil in a skillet set over medium heat. Add the onion and garlic and cook 1-2 minutes, or until softened and translucent, but not brown. Add the beans and spinach and cook until heated through. Stir in the roast squash and 1/4 cup mole sauce.
Spoon about 1/4 cup of mole sauce into the bottom of a baking pan. Spoon 3/4 cup of filling into each tortilla; roll up and place seam-side down in the baking pan. Top with remaining mole sauce and crumbled queso fresco.
Bake for 15 minutes.. Top with pumpkin seeds and fresh cilantro.